Bioconductor Interaction term

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deseq2 extracting contrasts rnaseq interaction term

updated 5.9 years ago by swbarnes2 ★ 1.3k • written 5.9 years ago by Amit Indap ▴ 10

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deseq2 sva interaction term grouping variable deseq

6.3 years ago kevin.kingsland ▴ 70

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deseq2 multiple factor design nested design interaction term

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by zahra.aboukhalil • 0

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deseq2 interaction term

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by sofiagreen72211 ▴ 10

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deseq2 deseq limma interaction term

updated 7.0 years ago by Simon Anders ★ 3.7k • written 7.0 years ago by sbcn ▴ 80

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deseq2 interaction term

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by Cece • 0

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deseq2 multiple factor design interaction term

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by Giovanni Bacci • 0

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deseq2 ANOVA design interaction term

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by tarun2 • 0

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deseq2 design interaction term R

6.2 years ago briverog • 0

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deseq2 lfcshrink interaction term

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by krutherford • 0

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deseq2 interaction term multiple groups betaprior

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by tarun2 • 0

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deseq2 multifactor interaction term gender effect 3-factors

updated 5.0 years ago by Michael Love 42k • written 5.0 years ago by kmu004 ▴ 50

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deseq2 interaction term

5.6 years ago guipagui • 0

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Comment: Help with running egsea() by Chris • 0

I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…

Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0

Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

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Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Answer: How to save the DEXSeq results

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Popular Question to Gyan Prakash Mishra ▴ 10